Home Around Opus

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Formations

 

Around Opus : Formations

Various formations and training programs are available around Opus, such as:

  • Training program ’Vers une démarche Incertitudes’. Set up by the IMdR working group ’Incertitudes et Industrie’, this training program is nowadays hosted by the Laboratoire Nationale de Métrologie et d”Essai (LNE) and it is now part of its permanent training offer.
  • ERCOFTAC Course on Uncertainty Quantification. Inspired by the results of the European project NODESIM-CFD (Non Deterministic Simulations in CFD), the scientific society ERCOFTAC (European Research Community On Flow, Turbulence And Combustion) organizes since 2011 a two-days awareness course on ’Uncertainty Management and Quantification in Industrial Analysis and Design’. This course is specifically intended to CFD communities, and it is a good vector to spread the common vision of uncertainty analysis and, at the same time, getting back new valuable requirements, inputs and viewpoints. Such courses were held in Germany and USA-Virginia.
  • Professional training about uncertainty analysis at EDF. Through its Institute of Technology Transfer (ITech), the R&D Unit of EDF organizes several training courses which covers the wide range of the company’s business areas, such as risk management and operating safety, scientific computing, nuclear energy, hydraulics, ecology, energy markets, statistics and data analysis. The current ITech training program is made up of 23 courses; most take place in EDF R&D facilities, once or twice a year. The courses, led by EDF R&D engineers and technicians, are rooted into the reality of EDF’s business and mainly intended to EDF’s researchers and engineers. However, a great number of them are open to participants which are external to the company. In particular, it is the case for two courses about uncertainty analysis. These courses are largely inspired by the work led in both internal and external projects (like OPUS).
  • The Maison de la Simulation offers a Parallel sparse linear algebra formation, in collaboration with  CERFACS et Inria, within the framework of Equip@meso project. It will take place in INRIA Bordeaux Sud-Ouest, from 11-28-2011 to 02-12-2011. See website and pdf presentation.

Last Updated (Thursday, 29 September 2011 02:35)

 

Uncertainties-Related Publications

This page links some uncertainties-related publications relevant to the Opus community.


Polynomial chaos expansion for sensitivity analysis.

Thierry Crestaux (CEA-DM2S), Olivier Le Maitre (LIMSI-CNRS), Jean-Marc Martinez (CEA-DM2S)

In this paper, the computation of Sobol’s sensitivity indices from the polynomial chaos expansion of a model output involving uncertain inputs is investigated. It is shown that when the model output is smooth with regards to the inputs, a spectral convergence of the computed sensitivity indices is achieved. However, even for smooth outputs the method is limited to a moderate number of inputs, say 10 – 20, as it becomes computationally too demanding to reach the convergence domain. Alternative methods (such as sampling strategies) are then more attractive. The method is also challenged when the output is non-smooth even when the number of inputs is limited.


Controlled stratification for quantile estimation,

C. Cannamela, J. Garnier, and B. Iooss, Ann. Appl. Stat., Vol. 2, pp. 1554-1580 (2008).

In this paper we propose and discuss variance reduction techniques for the estimation of quantiles of the output of a complex model with random input parameters. These techniques are based on the use of a reduced model, such as a metamodel or a response surface. The reduced model can be used as a control variate; or a rejection method can be implemented to sample the realizations of the input parameters in prescribed relevant strata; or the reduced model can be used to determine a good biased distribution of the input parameters for the implementation of an importance sampling strategy. The different strategies are analyzed and the asymptotic variances are computed, which shows the benefit of an adaptive controlled stratification method. This method is finally applied to a real example (computation of the peak cladding temperature during a large-break loss of coolant accident in a nuclear reactor).


Adaptive sparse polynomial chaos expansions for uncertainty propagation and sensitivity analysis.

G. Blatman, PhD Thesis, Université Blaise Pascal - Clermont-Ferrand II.

This thesis takes place in the context of uncertainty propagation and sensitivity analysis of computer simulation codes for industrial application. It is aimed at carrying out such probabilistic studies while minimizing the number of model evaluations which may reveal time consuming. The present work relies upon the expansion of the model response onto the polynomial chaos (PC) basis, which allows the analyst to perform post-processing at a negligible cost. However fitting the PC expansion may require a high number of calls to the model if the latter depends on a large number of input parameters, say more than 10. To circumvent this problem, two algorithms are proposed in order to select only a low number of significant terms in the PC approximation, namely a stepwise regression scheme and a procedure based on Least Angle Regression (LAR). Both approaches eventually provide PC representations with a small number of coefficients which may be computed using a reduced number of model evaluations. The methods are first tested and compared on various academic examples. Then they are applied to the industrial problem of the assessment of a pressure vessel of a nuclear powerplant. The obtained results show the efficiency of the proposed procedures to carry out uncertainty and sensitivity analysis of high-dimensional problems.


Quantifying uncertainty in an industrial approach : an emerging consensus in an old epistemological debate

E. de Rocquigny, S.A.P.I.EN.S, 2.1 | 2009

Uncertainty is ubiquitous in modern decision-making supported by quantitative modeling. While uncertainty treatment has been initially largely developed in risk or environmental assessment, it is gaining large-spread interest in many industrial fields generating knowledge and practices going beyond the classical risk versus uncertainty or epistemic versus aleatory debates. On the basis of years of applied research in different sectors at the European scale, this paper discusses the emergence of a methodological consensus throughout a number of fields of engineering and applied science such as metrology, safety and reliability, protection against natural risk, manufacturing statistics, numerical design and scientific computing etc. In relation with the applicable regula-tion and standards and a relevant quantity of interest for decision-making, this approach involves in particular the proper identification of key steps such as : the quantification (or modeling) of the sources of uncertainty, possibly involving an inverse approach ; their propagation through a pre-existing physical-industrial model; the ranking of importance or sensitivity analysis and sometimes a subsequent optimisation step. It aims at giving a consistent and industrially-realistic framework for practical mathematical modeling, assumingly restricted to quantitative and quantifiable uncertainty, and illustrated on three typical examples. Axes of further research proving critical for the environmental or industrial issues are outlined: the information challenges posed by uncertainty modeling in the context of data scarcity, and the corresponding calibration and inverse probabilistic techniques, bound to be developed to best value industrial or environmental monitoring and data acquisition systems under uncertainty; the numerical challenges entailing considerable development of high-performance computing in the field; the acceptability challenges in the context of the precautionary principle.




Last Updated (Wednesday, 07 April 2010 19:38)

 

Using R features from Opus

This document aims at presenting the Opus-R link module. It will allow calling R features directly from Opus.

The module was developed in Python, so as to allow use of the Opus TUI. It acts as a wrapper allowing interaction with an R-Python interface called Rpy2.

The module converts variables from Opus types to Python types and vice-versa. The variables are then used by Rpy2 to interact with R. This Opus-R link is called rpyWrap.

In essence, this allows the Opus user to call R functions with Opus-type arguments, and receive outputs in Opus-types too.

The conversion of variables is made by the conv() function. This function will call the overload method of the variable type sent in argument. The conv() function works both ways.

As not all variable types have equivalents in the other language, an exhaustive list of the possible conversions has been created (as of February, 2011).

There are more complex types to translate, such as vector, matrix, formula and the board of data.

Note that a Vector’s type depends on its contents (which are homogenous). Consequently, there are several vector types: vectors of floats, integers, characters, booleans as well as vectors of vectors.

Type equivalence:


For more details read this document. toto

Type conversion does not modify the data, so R functions can be called directly with Opus-type arguments and return Opus-type variables without loss of information.

From a practical point of view, using the wrapper is simple, as a single function makes the conversion both ways. However, in order to call R functions, the user has to know the correct Rpy syntax to call functions.

Actually we try to convert R-function in Opus-function and vice-versa.

 

Last Updated (Monday, 28 February 2011 03:43)

 

Workshop info & registration

Next workshop :

Date : 2011/10/21, 9h30 - 17h30.

Program : The workshop will present the main results of the project, industry-research interactions with real test cases, and also and especially the scientific perspectives. These will be :

  • Sensitivity analysis forcalculation codes;
  • Response surface modeling for costly code approximation, including intrusive methods such as 'certified reduced-basis';
  • Inverse probabilistic modelisation;
  • Robust extreme quantile estimation applied to numerical code output;

See poster.

Register : no need, entry is free.

Location : Institut Henri Poincaré (amphi Hermite); 11 rue Pierre et Marie Curie, Paris 5ème. Free entry.

Last Updated (Wednesday, 05 October 2011 20:11)

 

Workshop reports

Workshops

Workshop 1 - (2008-10-08)

Professor Tony Patera, MIT, USA - An overview on reduced basis/error estimation and applications to uncertainty quantification;

Professor Kai-Tai Fang, Beijing Normal University - China Design and Modeling for experiments with model uncertainty;

Emmanuel Vazquez, Supelec, France - On kriging and sequential search algorithms;

Round table with R.Gentleman from R and D.Bateman from Octave;

Workshop 2 - (2009-04-29)

Professor Robert B. Gramacy, Statistical Laboratory, Department of Mathematics, University of Cambridge, UK. - Bayesian treed Gaussian process models;

Professor Laurent Carraro, Département 3MI, Ecole des mines de Saint-Etienne, France - Scientific contributions in the DICE consortium;

Professor Francis Bach, Département d'Informatique, Ecole Normale Supérieure, France - Multiple kernel learning;

Round table : software integration of contributions in a single free platform;

Workshop 3 - (2009-10-25) "Spectral methods and polynomial chaos"

Olivier Lemaitre (LIMSI) -

Fabio Nobile, Politecnico di Milano - Sparse Grid Stochastic Collocation methods for Uncertainty Quantifi cation

Géraud Blatman and Thierry Crestaux - thesis work

Michael Baudin (Scilab) and Jean-Marc Martinez (CEA) -  Scilab toolbox NISP.

Marc Berveiller (EDF) and Régis Lebrun (EADS) - developments on functional chaos in OpenTURNS.

Workshop 4 - (2010-06-29) "Uncertainty propagation, rare quantile and extreme failure proability estimation"

Alberto Pasanisi (EDF-R&D) - Introduction

Josselin Garnier (Université Paris 7) - Interacting particle systems for the analysis of rare events

Philippe Naveau (Lab. Sciences du Climat et l'Environnement, CNRS) - Applications of multivariate extreme value theory to environmental data analysis

Pierre Del Moral (INRIA, Université Bordeaux 1) - Sur les interprétations particulaires d'événements rares (On rare events particular interpretation)

Régis Lebrun (EADS IW) Algorithmes de simulation en espace standard (Simulation algorithms in standard space)

Bruno Sudret (Phiméca) - Méta-modèles pour le calcul de probabilités d'événements rares (Metamodels for rare event probability calculation)

Fabien Mangeant (EADS IW) Calcul de quantiles faibles pour une application de guidage (Small quantile calculation for a guiding application)

Miguel Munoz Zuniga (EDF-R&D, Université Paris 7) Estimation de faibles probabilités de défaillance par une méthode originale de Monte Carlo accélérée (Extreme failure probability estimation by an original accelerated Monte-Carlo method)

Alberto Pasanisi : Conclusion

Workshop 5 - (2011-03-22) "Calcul haute performance, environnements de calcul et logiciels, applications à la quantification d'incertitudes"

C. Perez (INRIA) Tendances dans le calcul haute performance

C. Prieur (UJF), L. Viry (UJF), B. Depardon (Sysfera) Analyse de sensibilité pour la mousson en Afrique de l'ouest: de la méthodologie au calcul distribué

D. Busby (IFP Energies Nouvelles) Cougar

F. Gaudier (CEA) Uranie

R. Barate (EDF), I. Dutka-Malen (EDF), P. Benjamin (EADS) OpenTURNS





* *  *

 

Workshop 1 - (2008-10-08)

The first OPUS workshop took place at EDF/Clamart(near Paris) on October 8 2008. This workshop was organized by Guennadi Andrianov from EDF and Anestis Antoniadis and Christophe Prud'homme both from UJF/LJK.

Three talks were organized in the morning :

Professor Tony Patera, MIT, USA - An overview on reduced basis/error estimation and applications to uncertainty quantification

We discuss reduced basis approximation and associated a posteriori error estimation for reliable real-time solution of parametrized partial differential equations.

The crucial ingredients are rapidly convergent Galerkin approximations over a space spanned by "snapshots" on the parametrically induced solution manifold; rigorous and sharp a posteriori error estimators for the outputs/quantities of interest; effective constructions for stability-constant lower bounds; efficient Greedy (in parameter) or POD (in time)/Greedy (in parameter) selection of quasi-optimal samples; and Offine-Online computational procedures for rapid calculation in the many-query and real-time contexts.

We consider linear and nonlinear elliptic problems, linear and nonlinear parabolic equations, and linear hyperbolic equations. Examples are drawn from heat transfer (steady and unsteady conduction and convection), acoustics (in the frequency and time domains), solid mechanics (e.g., crack stress intensity factors), and fluid dynamics (the incompressible Navier-Stokes equations). Finally, we discuss the application of our reduced basis approximations and error bounds to uncertainty analysis. We consider two contexts, both of which exploit the many-query efficiency and reliability of the reduced basis formulation. In the first - forward - context, we explore output variation in the presence of stochastic parameter dependence. In the second - inverse - context, we address parameter estimation in the presence of numerical and experimental output error. In both cases we realize computational savings of several orders of magnitude relative to classical approaches.

Presentation slides.

More information (papers, talks, software,...) at : http://augustine.mit.edu

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Professor Kai-Tai Fang, Beijing Normal University, China - Design and Modeling for experiments with model uncertainty

Presentation slides.

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Emmanuel Vazquez, Supelec, France - On kriging and sequential search algorithms

The optimization of functions whose evaluation involves time-consuming computer programs has often to be achieved with a small budget of evaluations. In this context, the Expected Improvement (EI) algorithm - a kriging based approach to optimization - has become popular for it can lead to significant savings in the number of function evaluations over traditional optmization methods. The EI algorithm is known as a sequential Bayesian global optimization technique. During the optimization, the expensive-to-evaluate function is replaced by a cheap approximation, and the probabilistic framework of kriging is used to account for the uncertainty on the function approximation. This talk will start with a presentation of the technique and will discuss several variations, including the recently proposed Informational Approach to Global Optimization (IAGO) strategy, which takes a step forward in this domain and has successfully been applied in the context of industrial problems. Finally, we will show that the ideas supporting Bayesian optimization can be generalized to derive other types of sequential search algorithms, e.g. algorithms to estimate quantiles or probabilities of failure.

Presentation slides.

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Round table with R.Gentleman from R and D.Bateman from Octave.

People from Scilab, Debian/GNU/Linux and other open-source/free software were present at the round table

The "process" sub-session addressed the collaborative development process issues, for example the natural willingness of each partner to stick to its habits i.e. use specific dependencies and development environments (R, Matlab, Scilab, Octave, C++, ...). We shall discuss of good processes to establish and pitfalls to avoid.

The "service and long term prospects" sub-session will start right after the coffee-break. It will address the issues of commercial service around open source/free software and the project life after the initial funding dries out.

In both sub-sessions the question of intellectual property, copyright and licensing is important and thus shall be discussed although from different point of views.

Presentation slides.

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Workshop 2 (2009-04-29)

The second OPUS workshop, dealing with machine learning and model selection, with an emphasis on DICE consortium's work, took place on the 29th of April, 2009, at the CEA in Saclay. Continuing the formula of two half-days from the first workshop, the morning was spent on three theoretical presentations (R. Gramacy, F. Bach, L. Carraro), while the afternoon was spent as a round table dealing with software integration of contributions in a single free platform.

The first returns are positive. However, improvement is possible. In the next workshop, it seems mandatory to introduce the Opus project, as well as its aims and ways to contribute. Indeed, these elements will facilitate comprehension of the context as wall as constitute a basis for the talks of the afternoon.

Workshop program.

Professor Robert B. Gramacy, Statistical Laboratory, Department of Mathematics, University of Cambridge, UK - Bayesian treed Gaussian process models;

Computer experiments often require dense sweeps over input parameters to obtain a qualitative understanding of their response. However, such sweeps are unnecessary in regions where the response is easily predicted; well-chosen designs could allow a mapping of the response with far fewer simulation runs. I explore a modern approach that couples two standard regression models: Gaussian processes and treed partitioning. A Bayesian perspective yields an explicit measure of (nonstationary) predictive uncertainty that can be used to guide sampling. The methods will be illustrated through several examples, including a motivating example which involves the computational fluid dynamics of a NASA re-entry vehicle.

Related documents :

Slides

Figures

Adaptive Design and Analysis of Supercomputer Experiments (2009) with Herbert K.H. Lee. Technometrics, 51(2), pp. 130-145; preprint on arXiv:0805.4359;

Bayesian treed Gaussian process models with an application to computer modeling (2008) with Herbert K.H. Lee. Journal of the American Statistical Association, 103(483), pp. 1119-1130; preprint on arXiv:0710.4536;

tgp: An R Package for Bayesian Nonstationary, Semiparametric Nonlinear Regression and Design by Treed Gaussian Process Models (2007). Journal of Statistical Software, 19(9); snapshot of the R vignette for the tgp package as of June 2007;

Categorical inputs, sensitivity analysis, optimization and importance tempering with tgp version 2, an R package for treed Gaussian process models (2009) with Matt Taddy. To appear in the Journal of Statistical Software; snapshot of one of two R vignettes in the tgp package as of January 2010

The tgp package on cran (http://www.cran.r-project.org/web/packages/tgp/index.html)

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Professor Laurent Carraro, Département 3MI, Ecole des mines de Saint-Etienne, France - Scientific contributions in the DICE consortium;

Presentation slides.

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Professor Francis Bach, Département d'Informatique, Ecole Normale Supérieure, France - Multiple kernel learning;

Multiple kernel learning refers to a theoretical and algorithmic framework aimed at learning the kernel directly from data for supervised learning techniques such as the support vector machine (SVM). The framework is based on a convex parameterization of the set of kernels and a convex formulation which can be cast as a block L1-norm regularization. In this talk, I will explore some applications and large-scale optimization algorithms, as well as some recent links with sparsity-inducing norm theory.

Presentation slides.

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Round table : dealing with software integration of contributions in a single free platform.

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Workshop 3 (2009-10-25) - "Spectral methods and polynomial chaos"

On the 25th of November, within the Opus project, a workshop titled "Spectral methods and polynomial chaos" took place at EADS in Suresnes. Both theoretical aspects and software implementation were discussed, on the morning and afternoon respectively.

General Opus presentation.

Olivier Lemaitre, LIMSI

Spectral methods for uncertainty propagation; numerical fluid mechanics application.

Slides.

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Fabio Nobile, MOX, Department of Mathematics, Politecnico di Milano, Italy

Sparse Grid Stochastic Collocation methods for Uncertainty Quantifi cation

This talk focuses on the numerical approximation of di fferential problems whose coefficients, forcing terms, boundary conditions, etc. (hereafter called parameters) are uncertain and modeled as random vectors. In particular, we present sparse grid stochastic collocation methods, where the deterministic problem is successively solved on a sequence of cleverly chosen points in the parameter space, typically Gauss points with respect to the underlying probability measure.

We present a general sparse grid construction that allows us to achieve approximation in a given multivariate polynomial space. This includes the "classical" Smolyak construction that provides approximation in a hypebolic-cross type polynomial space, as well as a construction for approximations in total degree polynomial spaces. The general algorithm allows us to work also in anisotropic polynomial spaces, where the maximum polynomial degree used for each random variable depends on the relative importance that such random variable has on the output quantity.

In context of the numerical approximation of elliptic Partial Di fferential Equations with random coefficients, we present a strategy to select a proper anisotropic space.

Numerical examples show that the stochastic polynomial sparse grid approximation can be very e ffective for problems that feature a high regularity with respect to the random parameters, and greatly reduces the curse of dimensionality with respect to a full tensor product approximation. Also, a properly
chosen anisotropy allows us to obtain far superior results whenever the random variables have highly diff erent infuence on the output quantity.

In all cases examined, the stochastic sparse grid approach is superior to simple Monte Carlo Sampling.

References

[1] J. Bäck, F. Nobile, L. Tamellini, and R. Tempone, "Stochastic Galerkin and collocation methods for PDEs with random coefficients: a numerical comparison," ICES Report 09-33, ICES, The University of Texas at Austin, 2009. Submitted to special volume of "Lecture Notes in computational Science and Engineering", Springer. Proceedings of the ICOSAHOM '09 Conference.

[2] F. Nobile and R. Tempone, "Analysis and implementation issues for the numerical approximation of parabolic equations with random coefficients", Int. J. Num. Methods Engrg., vol. 80, no. 6-7, pp. 979-1006, 2009. Special Issue: Uncertainty Quanti cation in Computational and Prediction Science.

[3] F. Nobile, R. Tempone, and C. Webster, "An anisotropic sparse grid stochastic collocation method for partial di fferential equations with random input data," SIAM J. Numer. Anal., vol. 46, no. 5, pp. 2411-2442, 2008.

[4] F. Nobile, R. Tempone, and C. Webster, "A sparse grid stochastic collocation method for partial di fferential equations with random input data," SIAM J. Numer. Anal., vol. 46, no. 5, pp. 2309-2345, 2008.

[5] I. Babuska, F. Nobile, and R. Tempone, "A stochastic collocation method for elliptic partial di fferential equations with random input data," SIAM J. Numer. Anal., vol. 45, no. 3, pp. 1005-1034, 2007.

Abstract.

Slides.

Website.

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Géraud Blatman and Thierry Crestaux

Thesis work: sparse adaptative polynomial chaos based on LAR procedure.

Slides.

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Michael Baudin (Scilab) and Jean-Marc Martinez (CEA) - Scilab toolbox NISP.

Presentation slides.

Further slides.

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Marc Berveiller (EDF) and Régis Lebrun (EADS) - developments on functional chaos in OpenTURNS.

Slides.

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Workshop 4 - (2010-06-29) "Uncertainty propagation, rare quantile and extreme failure proability estimation"

Alberto Pasanisi (EDF-R&D) - Introduction

Slides.

Top

Josselin Garnier (Université Paris 7) - Interacting particle systems for the analysis of rare events

Slides.

Top

Philippe Naveau (Lab. Sciences du Climat et l'Environnement, CNRS) - Applications of multivariate extreme value theory to environmental data analysis

Slides.

Top

Pierre Del Moral (INRIA, Université Bordeaux 1) - Sur les interprétations particulaires d'événements rares (On rare events particular interpretation)

Slides.

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Régis Lebrun (EADS IW) Algorithmes de simulation en espace standard (Simulation algorithms in standard space)

Slides.

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Bruno Sudret (Phiméca) - Méta-modèles pour le calcul de probabilités d'événements rares (Metamodels for rare event probability calculation)

Top

Fabien Mangeant (EADS IW) Calcul de quantiles faibles pour une application de guidage (Small quantile calculation for a guiding application)

Top

Miguel Munoz Zuniga (EDF-R&D, Université Paris 7) Estimation de faibles probabilités de défaillance par une méthode originale de Monte Carlo accélérée (Extreme failure probability estimation by an original accelerated Monte-Carlo method)

Slides.

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Alberto Pasanisi : Conclusion

Slides.

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Workshop 5 - (2011-03-22) "Calcul haute performance, environnements de calcul et logiciels, applications à la quantification d'incertitudes"

C. Perez (INRIA) Tendances dans le calcul haute performance

Slides

Top

C. Prieur (UJF), L. Viry (UJF), B. Depardon (Sysfera) Analyse de sensibilité pour la mousson en Afrique de l'ouest: de la méthodologie au calcul distribué

Slides

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D. Busby (IFP Energies Nouvelles) Cougar

Top

F. Gaudier (CEA) Uranie

Slides

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R. Barate (EDF), I. Dutka-Malen (EDF), P. Benjamin (EADS) OpenTURNS

Slides

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Last Updated (Thursday, 16 June 2011 00:26)

 
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